Class HetCutOff

java.lang.Object
  HetCutOff

public class HetCutOff
extends java.lang.Object

This program selects from the input data the marker loci for which the heterozygosity score is higher than a given threshold. The heterozygosity score is 1 minus the sum of the squared allele frequencies. This value is between 0 and 0.5.

Usage : java HetCutOff input.par input.ped [output.par] [output.ped] [thresh]

where

• input.par is the input LINKAGE parameter file.
• input.ped is the input LINKAGE pedigree file.
• output.par is the output LINKAGE parameter file. The default is to write to standard output.
• output.ped is the output LINKAGE pedigree file. The default is to write to standard output.
• thresh is the minimum hetrozygosity required. The defaule value is 0.1.

Constructor Summary

HetCutOff()

Method Summary

static void

main(java.lang.String[] args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HetCutOff

public HetCutOff()

Method Detail

main

public static void main(java.lang.String[] args)