Class TrimPed

java.lang.Object
  TrimPed

public class TrimPed
extends java.lang.Object

This program removes individuals from the pedigree unless they have a minimum number of loci at least partially observed or they are ancestors of someone else that is observed.

Usage : java TrimPed input.par input.ped min_calls

where

• input.par is the original LINKAGE parameter file
• input.ped is the original LINKAGE pedigree file
• min_calls is the minimum number of loci with some information

A new LINKAGE pedigree data file is written to standard output.

Constructor Summary

TrimPed()

Method Summary

static void	main(java.lang.String[] args)
static void	put(LinkageIndividual a, java.util.Set<LinkageIndividual> s, LinkagePedigreeData p)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TrimPed

public TrimPed()

Method Detail

main

public static void main(java.lang.String[] args)

put

public static void put(LinkageIndividual a,
                       java.util.Set<LinkageIndividual> s,
                       LinkagePedigreeData p)