Class TwoPointLods

java.lang.Object
  alun.util.Main
      TwoPointLods

public class TwoPointLods
extends Main

This program calculates two point lod scores on a grid of points.

Usage : java TwoPointLods input.par input.ped

where

• input.par is a LINKAGE parameter file
• input.ped is a LINKAGE pedigree file

The results are written to the standard output file as a bare table. There is a line of output for each marker containing the lod score for recombination fractions of

0.0, 0.01, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 0.99, 1.0

respectively.

Constructor Summary

TwoPointLods()

Method Summary

static void

main(java.lang.String[] args)

Methods inherited from class alun.util.Main

strip

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TwoPointLods

public TwoPointLods()

Method Detail

main

public static void main(java.lang.String[] args)